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-   -   Does GATK only work for human species? (http://seqanswers.com/forums/showthread.php?t=21115)

AllenLee_china 06-25-2012 12:08 AM

Does GATK only work for human species?
 
GATK can't work with reference genome provided by other web site ,but GATK only have given human reference geonome. So,does GATK only work for human species?

thanks!

dpryan 06-25-2012 01:00 AM

It works fine for other species. I use it mostly in mice, though it's certainly easier to do some things in humans due to the existence of the 1000 genomes project.

AllenLee_china 06-25-2012 01:35 AM

Which mice genome you used ? Does it download in UCSC ?

dpryan 06-25-2012 01:38 AM

mm9 from UCSC as well as some of the other strains from the Sanger Institute.

AllenLee_china 06-25-2012 01:44 AM

thank you ! I try it again.


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