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-   -   Index between genome and mRNA (http://seqanswers.com/forums/showthread.php?t=12181)

xinhaiping 06-20-2011 10:14 AM

Index between genome and mRNA
 
Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?


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