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xinhaiping 06-20-2011 10:15 AM

index between genome and mRNA
Hi. I finished calling SNP from genome resequencing data by using samtools. Now I need to know where the SNP located(5'-UTR, exon, intron, 3'UTR, et al). So is there any softwere I can use to build a index between genome and annotated mRNA so that I can calculate the variation of SNP in genes?

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