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-   -   What is the actually output of a Cufflinks GFT file? (http://seqanswers.com/forums/showthread.php?t=34624)

KnowNothing2 10-18-2013 04:28 PM

What is the actually output of a Cufflinks GFT file?
 
I've aligned my RNAseq data to the mouse genome using bowtie2, but I guess that output doesn't account for abundance, correct? So then you need to use cufflinks to quantify? Do I have this correct?


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