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-   -   Velvet Assemby Reference (http://seqanswers.com/forums/showthread.php?t=3559)

pcg 01-07-2010 02:39 PM

Velvet Assemby Reference
 
Hi All,

Can velvet align to a reference genome and if so how? Also do people have any thoughts on a good hash length. I am trying to align a transcriptome to a reference genome. I have 20M 35bp reads from Solexa.

Thanks,

Paul

Melissa 01-14-2010 06:37 AM

Velvet is an assembler not aligner. Look at alignment tools at http://seqanswers.com/forums/showthread.php?t=43 under "Align/Assemble to a reference".


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