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-   -   Repeats in ChIPSeq reads (http://seqanswers.com/forums/showthread.php?t=31532)

AndreaIzq 07-01-2013 02:16 AM

Repeats in ChIPSeq reads
 
I would like to know if there is an enrichement in repeats in my ChIP-Seq data. I would like to have an histogram of the class of repeats enriched in my ChIP data.
I have downloaded the Repbase but, do I have to align all my reads again to the RepBase? Allowing multiple positions or not? There's any straigth forward way to do so?

Thans in advance,
Andrea


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