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hasuni_globin 06-03-2019 07:41 AM

Glimmer3
 
Hey there,

I am currently using the newest version of Glimmer, Glimmer3.02. When running the g3-iterated-viral.csh script I get the "Failed to run Glimmer3" error at step 8 (glimmer3 also runs at step 4 and it worked just fine). The terminal reads "Segmentation fault (core dumped)". More specifically:

.
.
.Analyzing Sequence #9046
Start Find_Orfs
Start Score_Orfs
Start Process_Events
Start Trace_Back
Analyzing Sequence #9047
Start Find_Orfs
Start Score_Orfs
Segmentation fault (core dumped)

Some people suggest this has something to with glimmer3 not being able to access some memory (like a permission thing? this is unlikely because everything has rw permissions in my directory).... I'm sort of just lost at this point and am posting everywhere asking for help. Please help!!!!

hasuni_globin 06-03-2019 08:23 AM

Core dump shows:

Program terminated with signal 11, Segmentation fault.
#0 0x000000000041fd5e in Complement (ch=-48 '\320') at gene.cc:531


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