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-   -   Velveth output files (http://seqanswers.com/forums/showthread.php?t=42786)

thh32 04-25-2014 01:05 AM

Velveth output files
 
Hi, I am basically wondering which files velveth should produce as I have only been produced with Log, Roadmaps and Sequences in the out-dir folder.

The reason I ask if that I attempted to run velvetg, velveth and metavelvetg in one submission file and the above files were created and then an error occurred stating that a Graph file had not been created. I am now running the programs separately one after another to see at which step the issue occured but I was wondering if anyone has any idea or has had it happen? Any help you be greatly appreciated.

Thanks,
Tom

mastal 04-25-2014 01:16 AM

Velveth only produces the 3 output files Log, Sequences and Roadmaps.

Graph, Graph2 and LastGraph files are produced by velvetg.

thh32 04-25-2014 01:17 AM

Oh ok so my script obviously skipped velvetg for some reason, thanks for the help.


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