Hello,
I am using bowtie to align deep sequence data to get SAM output file.
I want to find reads that have more than 5 multiple mapping.
does anyone know how to find the number of alignment mapping for all reads in the output SAM file?
thanks
Jian
I am using bowtie to align deep sequence data to get SAM output file.
I want to find reads that have more than 5 multiple mapping.
does anyone know how to find the number of alignment mapping for all reads in the output SAM file?
thanks
Jian