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-   -   parsing blast output using filters using regular perl (http://seqanswers.com/forums/showthread.php?t=24891)

newbie2this 11-10-2012 06:02 AM

parsing blast output using filters using regular perl
 
So I have written a script for perl (I do not have BioPerl) to parse a blast output using filters. Example, I only want to extract hits with alignment lengths, %id,etc greater than a cutoff point. I keep getting uninitialized pattern match and concatenation errors. I have tried using google and other posts on here to fix the error but I am now at my wits end because I've been at it for over 2 days with no success.

Any suggestions?


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