SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   RNA Sequencing (http://seqanswers.com/forums/forumdisplay.php?f=26)
-   -   EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data (http://seqanswers.com/forums/showthread.php?t=16939)

htchu.taiwan 01-18-2012 07:04 AM

EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data
 
Hi,

I wrote a program for de novo assembly of paired-end RNA-seq data.

It's a 64-bits Windows command with .Net framework http://msdn.microsoft.com/en-us/library/w0x726c2.aspx.

You can try it on a Windows-7 PC with 16G RAM for the assembly of single run Illumina transcriptomic data (20G, 90bp~100bp paired-end reads).

EBARDenovo is designed for finding lower-expressed transcripts even their coverage depths are very low (even less than 2x).

The download link:
https://sourceforge.net/projects/ebardenovo

I wish you can obtained fine results by my EBARDenovo program.

Best regards,

I am Hsueh-Ting Chu from Taiwan. htchu.taiwan@gmail.com

haojam 05-23-2013 12:22 AM

Dear Hsueh-Ting Chu from Taiwan

Good to know about your EBARDenovo. Does it support for transcriptome data generated from other platforms like ion torrent other than Illumina.

Rocky

manoharan1988 06-10-2013 01:13 AM

Hi Hsueh-Ting Chu,

Could you please give me some Idea on working with denovo bacterial transcriptome data to find the expression level.

Regards,
Manoharan


All times are GMT -8. The time now is 09:34 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.