SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   Construct phylogenetic tree from SNP data? (http://seqanswers.com/forums/showthread.php?t=50929)

sandesh 03-11-2015 11:02 AM

Construct phylogenetic tree from SNP data?
 
Hello,

I need to construct phylogenetic tree using SNP data.
Lets say, 100 samples with 50 SNPs.
Is there any software?
or any way that I can try.

Thanks for all suggestions
Sandesh

themerlin 03-11-2015 11:36 AM

How do you have you SNP data arranged? If it is a multi-FASTA, you should be able to build a tree with most tree building applications. If it's in another format, you'll likely need to get it into multi-FASTA or another sequence alignment format.

sandesh 03-11-2015 11:45 AM

It is like this:
L 1 2 3
S1 AA GC TT
S2 TT CC CC
S3 AT GC TC

How can we make multi fasta from this one?


All times are GMT -8. The time now is 07:07 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.