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sanjeevksh 05-13-2016 04:59 PM

vcf to gvf conversion
Dear All,
Is there any tool available to convert vcf file to gvf file?

Genos 07-04-2016 07:28 PM

it's impossible.

If the vcf file only have filtered variant information, you don't have enough information to generate a gvcf file that covers all loci in the genome.

dan 07-19-2016 01:45 AM


I also have a 'genomic VCF', that /does/ cover all loci in the genome... Is it still impossible?


Medhat 07-19-2016 03:30 AM

have such tool

dan 07-19-2016 08:29 AM


Medhat 07-19-2016 09:28 AM


Originally Posted by dan (Post 196909)

this one VAAST

sanjeevksh 07-30-2016 03:56 AM

Thanks for the replies. However, I was looking for a vcf to gvf converter and not to gvcf. I found very useful set of scripts located here:


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