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-   -   SOAPdenovo v1.05 (http://seqanswers.com/forums/showthread.php?t=9948)

scami 03-09-2011 12:36 AM

SOAPdenovo v1.05
 
Hi All,

I am testing the new version of SOAPdenvo and I obtained some strange result. By using exactely the same dataset, configuration file and parameters I have the following statistics on the contig file for the version 1.04:

N50 = 1750
contig = 514836
length = 336705343
max contig length = 36963
mean length = 654.005048209527

On the other hand, by using the new SOAPdenovo31mer (v1.05) released a couple of weeks ago I get the following statistics:

N50 = 1653
contig = 536569
length = 331410443
max contig length = 36324
mean length = 617.647391109065


Is it possible that the new version performs worse than the previous one? Am I mistaking anything?

any help is really appreciated!

75mph 01-04-2013 11:04 PM

I wanna help you, but I really cannot, I am really completely new in this area. I also need your help.


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