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-   -   mapping contigs to reference genome (http://seqanswers.com/forums/showthread.php?t=44710)

sadiexiaoyu 07-04-2014 12:57 AM

mapping contigs to reference genome
 
Dear All,

I got some contigs from de novo assemble. Now I would like to map these contigs to the reference genome. Is there any good software can do this?

Best,

Sadiexiaoyu

sphil 07-04-2014 01:46 AM

check out mira , or maybe mauve

yzzhang 07-04-2014 05:19 AM

abacas may be also usefulhttp://abacas.sourceforge.net/Manual.html


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