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-   -   FASTQ read filtering/trimming/subsets ... a new approach (http://seqanswers.com/forums/showthread.php?t=65553)

kopardev 01-14-2016 08:34 AM

FASTQ read filtering/trimming/subsets ... a new approach
 
Please try MEEPTOOLS and post your comments on how we can improve it.
Thanks.

https://github.com/nisheth/meeptools

sklages 01-15-2016 04:53 AM

Any description on how the algorithm is working?
What are the advantages over average phred scores?
Did you compare speed and results (accuray etc) with other already existing programs to get a rough idea about meeptools performance?

best,
Sven

kopardev 01-15-2016 05:31 AM

Thank you Sven for your questions. These are all interesting questions. Our manuscript is available at arxiv for download. I believe this will answer all your questions. I encourage you to download it and skim through. If you have further questions, I will be happy to answer them. Have a nice day.

http://arxiv.org/pdf/1512.03344v1.pdf

sklages 01-17-2016 10:26 PM

Thanks for the link.


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