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Coregonus 08-27-2015 06:37 AM

Failed assembly due to memory limits in pyRAD
Hi all,

I am trying to do some population genetics using reduced genomic sequence data with little variation between samples. I am analyzing 500 RAD samples in pyRAD versions 3.0.6 ( Finally, it completed step 6 (clustering of consensus sequences) but when running step 7 it just produces the .loci and the .excluded_loci files (both files look quite good). However, the pyRAD doesn’t generate any other output-files (and any error messages). D. Eaton (the developer of pyRAD) thinks that my dataset is too large and the program fails due to memory limits. What can I do?

Thanks in advance,

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