SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   The Pipeline (http://seqanswers.com/forums/forumdisplay.php?f=13)
-   -   Failed assembly due to memory limits in pyRAD (http://seqanswers.com/forums/showthread.php?t=62298)

Coregonus 08-27-2015 06:37 AM

Failed assembly due to memory limits in pyRAD
 
Hi all,

I am trying to do some population genetics using reduced genomic sequence data with little variation between samples. I am analyzing 500 RAD samples in pyRAD versions 3.0.6 (dereneaton.com/software/pyrad/). Finally, it completed step 6 (clustering of consensus sequences) but when running step 7 it just produces the .loci and the .excluded_loci files (both files look quite good). However, the pyRAD doesn’t generate any other output-files (and any error messages). D. Eaton (the developer of pyRAD) thinks that my dataset is too large and the program fails due to memory limits. What can I do?

Thanks in advance,
Alex


All times are GMT -8. The time now is 08:10 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.