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leukogenom 08-06-2012 03:36 PM

TMAP: exception src/io/tmap_file.c
TMAP can't seem to open any reference files that I pass it. I've tried several different reference files but I always get the following exception

src/io/tmap_file.c:83: in function "tmap_file_fopen"
fatal error: could not open the file
the file stream error was: No such file or directory

I'm not sure why tmap_file_fopen is trying to open a file that is named

nilshomer 08-13-2012 06:13 PM

Did you try indexing the FASTA first with "tmap index -vf <in.fasta>"?

leukogenom 08-15-2012 08:44 AM

Thank you Nils. That did the trick ;)

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