Hi Everyone,
I don't know what exactly happened. I have been working with R and cummeRbund for the past few months. Everything seemed to be fine with the
getGenes command in the manual.
Apparently, when I enter the getGenes commands. I get the following error:
I am using latest version of cummeRbund with R. Also my Cuffdiff output was done through Cufflinks/Cuffmerge/Cuffdiff 2.0.2.
I checked my old data, which has worked in the past and I received the same error, which is strange.
Also I have reinstalled cummeRbund as well. I've rebuilt the database file as well. No matter, what I do I get this same error.
If someone could kindly help me. I would really appreciate it.
Thank you,
Zapages
I don't know what exactly happened. I have been working with R and cummeRbund for the past few months. Everything seemed to be fine with the
getGenes command in the manual.
Apparently, when I enter the getGenes commands. I get the following error:
Code:
> myGenes <- getGenes(cuff,myGeneIds) Getting gene information: FPKM Error in sqliteExecStatement(con, statement, bind.data) : RS-DBI driver: (error in statement: near ")": syntax error)
I checked my old data, which has worked in the past and I received the same error, which is strange.
Also I have reinstalled cummeRbund as well. I've rebuilt the database file as well. No matter, what I do I get this same error.
If someone could kindly help me. I would really appreciate it.
Thank you,
Zapages
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