I'm attempting to convert an SRF file into FASTQ format using srf2fastq, which is a tool included in the Staden package.
I'm executing the following command:
srf2fastq -s BC3 -a -n -c in.srf
This should split the resulting FASTQ into two files since it's paired read data.
When the program finishes, I get the following message:
'Block of unknown type '3'. Aborting'
The FASTQ files are created, but I don't know if they are truncated because of this "error".
Is the above error normal?
I'm executing the following command:
srf2fastq -s BC3 -a -n -c in.srf
This should split the resulting FASTQ into two files since it's paired read data.
When the program finishes, I get the following message:
'Block of unknown type '3'. Aborting'
The FASTQ files are created, but I don't know if they are truncated because of this "error".
Is the above error normal?
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