SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   Ion torrent PCR duplicates (http://seqanswers.com/forums/showthread.php?t=33231)

DavyK 08-29-2013 03:14 AM

Ion torrent PCR duplicates
 
Hi All,

I am looking at some targeted ion torrent sequencing data. Over 90% of mapped reads are PCR duplicates. Is this normal? I thought it might be because the target is very small (11kb, 16 individuals), but I honestly am not sure.

Any ideas, given the target size how many duplicates I should be expecting?

Cheers,
Davy


All times are GMT -8. The time now is 12:46 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.