SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   tophat hg19 index (http://seqanswers.com/forums/showthread.php?t=11970)

madsaan 06-10-2011 08:27 AM

tophat hg19 index
 
Hi,

I was wondering if it is ok to use the pre built hg19 index from Tophat for BWA as the reference genome or should I build an index by myself?

Thanks,
Joji

Jon_Keats 06-10-2011 09:56 PM

For BWA you will need to build a new one the TopHat (aka bowtie) index will not work. Human hg19 build takes around 3 hours on a typical system. For genome source I'd suggest the 1000 genomes version of GRCh37 (aka hg19)


All times are GMT -8. The time now is 12:53 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.