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-   -   use of BaseSpace app for outside data (http://seqanswers.com/forums/showthread.php?t=67584)

wingtec 04-14-2016 06:10 AM

use of BaseSpace app for outside data
 
Hi All,

Has anyone tried to import outside work into a project in BaseSpace and then use the Apps in BaseSpace to process the data, such as tophat?

Thanks

Wing

westerman 04-14-2016 07:42 AM

Yes, I have tried. Did not work as of about 6 months ago.

ScottC 04-14-2016 03:22 PM

Yes. What in particular did you want to know?

wingtec 04-19-2016 10:23 AM

I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

Thanks

W

bbm 04-22-2016 07:43 AM

Quote:

Originally Posted by wingtec (Post 192522)
I am just wondering if I can take a piggy-back of the APPs in BaseSpace for analysis of, say, RNA-Seq data, which were generated outside of BaseSpace.

Thanks

W

I have the same question....any answers?

fanli 04-22-2016 09:31 AM

Seems like more work than it's worth IMO. Why not use Galaxy if that's what you're looking for?


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