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  • Recommended pipeline for differential miRNA-seq

    Dear all,

    I was a SeqAnswers member few years ago while working on human genetics at Kings' College London. I just re-registered again, in my current job as animal geneticist at CRAG (Barcelona).

    We want to carry a microRNA-seq experiment in an Illumina HiSeq2000 to carry a differential expression analysis from porcine sperm.

    I would like to know which is the most recommendable bioinformatics pipeline nowadays for our miRNA-seq study.

    Thanks for sharing your knowledge and experience!

    Alex Clop

  • #2
    I use CAP-miRSeq that includes differential expression analysis with edgeR

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