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  • SSPACE error This Perl not built to support threads

    Hello,

    When I try to run SSPACE on SGE, I got the following error
    How can I fix it? any suggestions?

    Thanks,


    This Perl not built to support threads
    Compilation failed in require at /scratch/bins/SSPACE-STANDARD-3.0_linux-x86_64/bin/readLibFiles.pl line 11.
    BEGIN failed--compilation aborted at /scratch/bins/SSPACE-STANDARD-3.0_linux-x86_64/bin/readLibFiles.pl line 11.
    Your inserted inputs on [SSPACE_Standard_v3.0_linux] at Wed Jul 9 16:17:33 2014:
    Required inputs:
    -l = /home/scratch/bins/SSPACE-BASIC-2.0_linux-x86_64/library_kl.txt
    Number of paired files = 3
    -s = /home/scratch/data/assembly/kl/HGAP_all/data/draft_assembly.fasta
    -b = draft_scaffold

    Optional inputs:
    -x = 0
    -z = 1000
    -k = 5
    -g = 0
    -a = 0.7
    -n = 15
    -T = 1
    -p = 0

    **************************************************

    Process 'reading files' failed on Wed Jul 9 16:17:33 2014

  • #2
    You need to compile the multi-threading when you install/compile the perl using '-Dusethreads'

    Comment

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