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-   -   Denovo identification of Centromere and Telomere (http://seqanswers.com/forums/showthread.php?t=76611)

Jassipox 06-17-2017 06:35 AM

Denovo identification of Centromere and Telomere
 
Dear Member,


I am looking for any denovo tool or any idea to locate the centromere and telomere position in the chromosome of plant genome .

Although I have tried the blast for telomere but get few related information but for centromere still looking for any proper solution.


Any related suggestion is welcome!!


Thank you in advance!


Pawan

PhaseGenomics 09-17-2018 12:30 PM

Hi Pawan,

There is a precedent for using Hi-C data to identify centromere locations (Accurate identification of centromere locations in yeast genomes using Hi-C)

This should be possible in plants as well - please PM me if you'd like to discuss further.


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