SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Pacific Biosciences (http://seqanswers.com/forums/forumdisplay.php?f=39)
-   -   No new SMRT cell data found in SMRT Portal (http://seqanswers.com/forums/showthread.php?t=93171)

weechingching 02-27-2020 11:03 PM

No new SMRT cell data found in SMRT Portal
 
Hi All,

The minimum requirement for SMRT Cells to be recognized by SMRT Portal is the *.metadata.xml file and all *.bax.h5 and *.bas.h5 files by referring to the link below

https://smrt-analysis.readthedocs.io...o-SMRT-Portal/

However, when i tried to import it into SMRT portal, it shows that No new SMRTcell data found. This is the directory hierarchy of all the files look like. Can anyone tell me any files that I'm missing?


(base) [Chee_Wei@clusterhn SRR5428623]$ ls
Analysis_Results
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.metadata.xml
(base) [Chee_Wei@clusterhn SRR5428623]$ ls Analysis_Results/
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.1.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.2.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.bax.h5.1
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.3.subreads.fasta
m150803_212153_42216_c100858342550000001823192601241650_s1_p0.bas.h5.1


Thanks


All times are GMT -8. The time now is 04:17 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.