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seq_lover 10-30-2011 09:31 PM

problem with running MAQ
I downloaded the MAQ and installed it as instructed in the manual. I moved the binary files to /home/user/bin directory and then I could run the maq commands from anywhere. i already converted reference fasta to bfa and fastq to bfq. When I am trying to run the following command i get an error. ANy help is appreciated.


/home/user/bin/maq map -n 2 -e 70 -u unmap2@16000001.txt  ref.bfa  read2@16000001.bfq 2>

maq: int ma_match(int, char**): Assertion `fp_bfa' failed.

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