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-   -   the meaning of sequence 'M','Y','K' in samtools? (http://seqanswers.com/forums/showthread.php?t=17431)

dkrtndhkd 02-05-2012 04:57 AM

the meaning of sequence 'M','Y','K' in samtools?
 
1 Attachment(s)
I alignmed illumina pair end data using bwa and visualize it by samtools tview option.

the attached is screenshot of samtools tview window.

what's the meaning of letter 'M','Y','K'?

dan 02-05-2012 06:58 AM

I guess they are the standard 'ambiguity' codes representing SNPs:
http://www.chick.manchester.ac.uk/Si...PAC_codes.html

dkrtndhkd 02-05-2012 11:56 PM

Thank you!!


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