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-   -   Velvet referenced assembly (http://seqanswers.com/forums/showthread.php?t=70617)

ronaldrcutler 08-01-2016 02:41 PM

Velvet referenced assembly
 
Hello all,

I see that Velvet has a Columbus module to assemble genomes using a reference as a template. Although it also says this is best used for transcriptome assembly and identification of breakpoints.

Has anybody used this for a genome assembly? Where one uses contigs from a de novo assembly as input against a closely related reference genome?

Thanks


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