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-   -   Error message with Coverage analysis (http://seqanswers.com/forums/showthread.php?t=93629)

Sonsulla 03-28-2020 08:10 PM

Error message with Coverage analysis
 
Hello everyone..
I have been doing a coverage analysis using ion torrens plugin tmapping for selective reference genomes. The process was doing OK for most of the samples except two baracode where I keep getting error message "
ERROR: bbctools create failed", I have repeated the process several times without any success. Could anyone help please to get me passed this issue. Thanks

More for the error

Creating base coverage files and analyzing target coverage...
/results/plugins/coverageAnalysis/run_coverage_analysis.sh: line 501: 99656 Segmentation fault (core dumped) /results/plugins/coverageAnalysis/bin/bbctools create -L 100 -Q 20 -R

coverageAnalysis_plugin.py: ERROR: Analysis of barcode IonXpress_060 failed:
Traceback (most recent call last):
File "/results/plugins/coverageAnalysis/coverageAnalysis_plugin.py", line 1117, in runForBarcodes
(resultData,reportData) = run_plugin(skip_analysis,barcode)
File "/results/plugins/coverageAnalysis/coverageAnalysis_plugin.py", line 255, in run_plugin
raise Exception("Failed running run_coverage_analysis.sh. Refer to Plugin Log.")
Exception: Failed running run_coverage_analysis.sh. Refer to Plugin Log.


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