SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   QC for replicates in ChIP-seq (http://seqanswers.com/forums/showthread.php?t=40927)

wonaya 02-14-2014 01:22 PM

QC for replicates in ChIP-seq
 
Hi, I have some ChIP-seq data to QC.
I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck.
Is there a standard algorithm people use for this besides viewing the mapped tracks?
Thanks!

rory 07-18-2014 05:18 AM

The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.

-Rory


All times are GMT -8. The time now is 09:53 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.