SEQanswers (
-   Bioinformatics (
-   -   QC for replicates in ChIP-seq (

wonaya 02-14-2014 01:22 PM

QC for replicates in ChIP-seq
Hi, I have some ChIP-seq data to QC.
I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck.
Is there a standard algorithm people use for this besides viewing the mapped tracks?

rory 07-18-2014 05:18 AM

The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.


All times are GMT -8. The time now is 09:53 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.