SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Genomic Resequencing (http://seqanswers.com/forums/forumdisplay.php?f=28)
-   -   IMAGE input files (http://seqanswers.com/forums/showthread.php?t=6182)

skingan 07-29-2010 01:02 PM

IMAGE input files
 
Hi,

We are using IMAGE to fill in gaps of our genome assembly but are not sure how to generate the required input files:

contigs.fa.original and
read.placed.original
(http://sourceforge.net/apps/mediawik...w_to_run_IMAGE)

Our initial assembly is done with BWA. Does anyone have a script that can use a BAM file (the BWA output) to generate contigs.fa.original and read.placed.original?

Thanks!

Sarah Kingan


All times are GMT -8. The time now is 11:03 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.