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-   -   Does Cufflinks support single-end and paired end data together ? (http://seqanswers.com/forums/showthread.php?t=7457)

ersenkavak 10-22-2010 05:14 AM

Does Cufflinks support single-end and paired end data together ?
 
Has anybody tried Cufflinks after merging single-end and paired-end data ?
I am guessing the connectivity between exons will be a lot better this way.
However, the --library-type parameter seems to allow either single or paired.

cheers

adarob 10-22-2010 08:26 AM

The default library-type will handle this mixture just fine.


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