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-   -   annotation for viral genome (http://seqanswers.com/forums/showthread.php?t=23802)

honey 10-02-2012 10:37 AM

annotation for viral genome
 
I am working on chipseq data for virus and wonder is there a tool to annotate the genome. I have FAStq file as well as NCBI accession no which will have all annottaions. Doing mannual may add errors and time consuming so I am trying to find if there is smart tool available out. Once I have chip tag enriched I can map the genome reggions back to their annottaion.


Thanks

Torst 10-07-2012 12:10 AM

Is the virus assembled into a contiguous sequence?

Is it an accession number for the sequence, or the short reads?

honey 10-07-2012 10:01 PM

annotation for viral genome
 
It has NCBI accession number.

Torst 10-07-2012 10:18 PM

Quote:

Originally Posted by honey (Post 85873)
It has NCBI accession number.

What is the accession number?


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