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-   -   Cufflinks deconvolution warnings and fpkm_tracking files (http://seqanswers.com/forums/showthread.php?t=14117)

gavin.oliver 09-15-2011 01:59 AM

Cufflinks deconvolution warnings and fpkm_tracking files
 
Hi all,

I am aware that deconvolution warnings in the isoforms.fpkm_tracking files generated by cufflinks mean the entry should be treated with suspicion/ignored.

However, am I correct in thinking that the FPKM value for the corresponding gene in the genes.fpkm_tracking file should still be safe to use, since the deconvolution is a transcript-level problem?

Thanks in advance.


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