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-   -   How To make mapping density of bowtie alignments (http://seqanswers.com/forums/showthread.php?t=19653)

oxydeepu 04-30-2012 12:48 AM

How To make mapping density of bowtie alignments
 
Hi all,

I have aligned the RNA-Seq reads generated in the lab to the transcriptome available using bowtie1. I want to make the wiggle tracks or mapping density of the reads to each contig. So that i can visualize the the alignment..
Please help. Badly need assistance.

Cheers
Deepak


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