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-   -   mitochondria in single nuclear RNAseq (http://seqanswers.com/forums/showthread.php?t=96385)

rtyagi 10-08-2020 03:34 PM

mitochondria in single nuclear RNAseq
 
for snRNAseq, do people use mitochondrial filtering? I'm not sure if this still makes sense even though we are working with data from nuclei rather than whole cells, but I do see some expression of mito genes in my data.

Also, is it preferable to filter the cells based on mito content or to regress it out?


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