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ejcho82 10-23-2011 10:46 PM

RSEM: has anyone tried this?
any verdicts on this one? Is it doing better than Cufflinks?

kopi-o 10-24-2011 02:30 AM

I haven't benchmarked it thoroughly yet so I don't have an answer to your second question, but one nice feature with it is that it can generate a simulated RNA-seq dataset to compare different quantifiers on (although one might not want to include RSEM itself in such a comparison).

RobertWood90 09-14-2019 12:08 PM

Yes I tried this. However, I had problems with some places that took me too long to solve. But in the end I managed to get it done. Thank you.

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