SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   Help with Exonerate output (http://seqanswers.com/forums/showthread.php?t=17462)

mycorr10 02-06-2012 01:50 PM

Help with Exonerate output
 
I'm doing some cdna to genomic dna alignments with exonerate but am having trouble parsing the output- not very good at that sort of thing.
I would like the gff and alignment as separate files. In particular does anyone know how to input the ryo option to make the alignment more like a basic fasta formatted alignment? I'd like to combine the results and make a multiple sequence alignment I can edit and view to make a consensus sequence.


All times are GMT -8. The time now is 10:21 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.