Any users of Xenome run into this? You start with an input file that follows FASTQ format (line 1 begins with @ and line 3 begins with +):
but the output loses the @ and + and is then not recognized by Tophat and probably other programs:
Is there some reason here that I don't understand for the output files to lose this?
Thanks!
Code:
@HISEQ03:124:C3R2RACXX:5:1101:2218:1990 1:N:0:TGACCA ATGCNAACTACATTGCCTGGTGTCAAGGTGGGAAAATCCTCTTTTATAACATAAAATCCTCTTCTAATCCATGTTGACCCAAGTCCTGGCTGTCTGAGGG + <BBF#0BBFFFFFFFFIIBFFFBFFBFF<FFFIFFFFF<FFBFIIFFFFFFIIFFFIIIIIIIIIIBFIFFFFFFBFFBFFFFBBBBBBBB<BBBBBBBB
Code:
HISEQ03:124:C3R2RACXX:5:1101:2218:1990 1:N:0:TGACCA ATGCNAACTACATTGCCTGGTGTCAAGGTGGGAAAATCCTCTTTTATAACATAAAATCCTCTTCTAATCCATGTTGACCCAAGTCCTGGCTGTCTGAGGG <BBF#0BBFFFFFFFFIIBFFFBFFBFF<FFFIFFFFF<FFBFIIFFFFFFIIFFFIIIIIIIIIIBFIFFFFFFBFFBFFFFBBBBBBBB<BBBBBBBB
Thanks!
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