Hello RNA Seq community,
Could someone please help me? I am using the command "source('http://www.bioconductor.org/biocLite.R')
biocLite('cummeRbund')" in the R environment, and my output is:
ERROR: dependency ‘DBI’ is not available for package ‘RSQLite’
* removing ‘/home/jmwhitha/R/x86_64-pc-linux-gnu-library/2.14/RSQLite’
ERROR: dependency ‘RSQLite’ is not available for package ‘cummeRbund’
* removing ‘/home/jmwhitha/R/x86_64-pc-linux-gnu-library/2.14/cummeRbund’
The downloaded packages are in
‘/tmp/Rtmp8pQWJT/downloaded_packages’
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘RSQLite’ had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘cummeRbund’ had non-zero exit status
3: 'cluster' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'foreign' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'KernSmooth' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'mgcv' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'nnet' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'rpart' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'survival' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
Could someone please help me? I am using the command "source('http://www.bioconductor.org/biocLite.R')
biocLite('cummeRbund')" in the R environment, and my output is:
ERROR: dependency ‘DBI’ is not available for package ‘RSQLite’
* removing ‘/home/jmwhitha/R/x86_64-pc-linux-gnu-library/2.14/RSQLite’
ERROR: dependency ‘RSQLite’ is not available for package ‘cummeRbund’
* removing ‘/home/jmwhitha/R/x86_64-pc-linux-gnu-library/2.14/cummeRbund’
The downloaded packages are in
‘/tmp/Rtmp8pQWJT/downloaded_packages’
Warning messages:
1: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘RSQLite’ had non-zero exit status
2: In install.packages(pkgs = pkgs, repos = repos, ...) :
installation of package ‘cummeRbund’ had non-zero exit status
3: 'cluster' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'foreign' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'KernSmooth' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'mgcv' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'nnet' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'rpart' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
'survival' cannot be updated, installed directory '/usr/lib/R/library' not
writeable
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