SEQanswers

SEQanswers (http://seqanswers.com/forums/index.php)
-   Bioinformatics (http://seqanswers.com/forums/forumdisplay.php?f=18)
-   -   What to do after finding differentially expressed genes? (http://seqanswers.com/forums/showthread.php?t=31948)

sazz 07-15-2013 09:44 AM

What to do after finding differentially expressed genes?
 
Hello all,

Which programs do you use after finding the differentially expressed genes between 2 conditions? I assume, everyone first look at which GO terms are enriched. So far I have used DAVID, attempted to use GSEA (but did not work well, maybe I am doing something wrong). Also I will be happy if anyone can inform me how to arrange the files in GSEA for RNA-seq.

Thanks,
Erdem

dpryan 07-15-2013 10:39 AM

There's GOSeq, which is probably a bit more appropriate for RNAseq datasets than DAVID. Aside from that, it depends on the biological question.


All times are GMT -8. The time now is 09:02 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.