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-   -   Coding Potential Calculator (http://seqanswers.com/forums/showthread.php?t=62408)

ctard 09-03-2015 02:00 AM

Coding Potential Calculator
 
Hi all !

I've been using CPC for a while and I've just recently noticed their website is down, I can't make the script work with Linux

I was wondering, do you experience the same problem with their platorm ? How come they closed it ?

What do you do then to assess the coding potential of your transcripts ?

Thanks so much !

Best,

Claire

darked89 09-16-2015 05:22 AM

The CPC site is up again. And the info about installation is here:
http://cpc.cbi.pku.edu.cn/docs/install_guide.jsp

I have not used it on the command line for a while but remember that some input and/or output file names were hard-coded in the scripts. Plus because it uses blast, there may be issues between i.e. blastall vs blast+ branches.


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