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-   -   Firebrowse Methylation Preprocessing CutOff (http://seqanswers.com/forums/showthread.php?t=75034)

jsaray 03-27-2017 08:34 AM

Firebrowse Methylation Preprocessing CutOff
 
Hi All,

At the end of this website :

https://confluence.broadinstitute.or...n+Preprocessor

At the Clustering section is stated that "The default cutoff is .2, but it can be tuned based on the desired output file size".

I would want to tune this cutoff programatically, but I don't find how this can be achieved. I am using Python and I have :

rnaSEQ = firebrowse.Archives().StandardData(cohort='COADREAD',data_type='Methylation_Preprocess')

I reviewed all the parameters of StandardData action, but I don't find this cutoff parameter.

Best regards,


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