G'day,
I am writing to enquire what maf cutoff/threshold people use when getting snps using the maq snp caller or any other means.
A lot of researchers seem to use 0.05 as applied for HapMap, but this is applicable for population data. Is there a "statistical" way to estimate this from the data or should one just do it arbitrarily?
Cheers!
BertieWooster
I am writing to enquire what maf cutoff/threshold people use when getting snps using the maq snp caller or any other means.
A lot of researchers seem to use 0.05 as applied for HapMap, but this is applicable for population data. Is there a "statistical" way to estimate this from the data or should one just do it arbitrarily?
Cheers!
BertieWooster
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