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-   -   suitable tools for hetero SNP/INDEL discovery? (http://seqanswers.com/forums/showthread.php?t=14532)

shuang 10-04-2011 09:18 AM

suitable tools for hetero SNP/INDEL discovery?
 
What would be the best software for discovering SNP/INDEL in both hetero and homo-zygote case? My data is from Sanger sequencing.

I tried bwa-sw with Samtools. It does not seem be able to distinguish hetero from bad-signal bases.


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