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-   -   Recommendation for CNV detection software in Illumina WGS data for cancer cells (http://seqanswers.com/forums/showthread.php?t=22382)

yuhao 08-09-2012 01:58 PM

Recommendation for CNV detection software in Illumina WGS data for cancer cells
 
Can anyone recommend some reliable software for CNV detection in cancer cells for Illumina WGS data?

stefanoberri 08-10-2012 01:49 AM

Hi

I am the developer of CNAnorm which is designed for normalisation, segmentation, GC correction and plotting of copy number data from very low coverage (~ 0.05X) whole genome sequencing. It also works with higher coverage (obviously takes more time and you will need a few tweeks) and some report using it sucesfully on exome capture data.

Please read this post where other users posted their questions and I provided some suggestions.

good luck

yuhao 08-11-2012 10:59 AM

Hi, stefanoberri, I am not able to access the paper for CNAnorm, could you mind to send me the paper in mailbox: hhhyyyccc@gmail.com? I appreciate it !

stefanoberri 08-15-2012 08:22 AM

Hi, sorry for the late reply.

Here you can find the preprint of the article and the supplemental material

yuhao 08-15-2012 09:42 AM

I am not able to open the link, could you send the article to me in : hhhyyyccc@gmail.com


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