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-   -   Is anyone using SNPSVM? (http://seqanswers.com/forums/showthread.php?t=31158)

Rocketknight 06-17-2013 09:41 AM

Is anyone using SNPSVM?
 
Hi, I just came across the paper on SNPSVM in Bioinformatics. It was showing up as one of the most-read articles this month, and it seems to be claiming a significantly better sensitivity/specificity tradeoff for SNP calling than samtools/UnifiedGenotyper.

Is anyone else using it? I'm trying it out here and I'm getting significantly fewer SNP calls with it than with UG. Not sure what to make of it just yet.


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