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-   -   ERCC spike-in analysis with python? (http://seqanswers.com/forums/showthread.php?t=92197)

Adiro 12-23-2019 08:44 AM

ERCC spike-in analysis with python?
 
Hi!
I have the expression data for RNA samples to which I added ERCC spike-Ins.
I want to do a preliminary analysis*, and I was wondering if there is a python package for that. I found an R package, but I'm much more flaunt in python.

(Just the basics: to see if the expected concentrations of spike-Ins is linear with the the coverage in my data, and also I want to check if the fold change between Mix1 and Mix2 between two samples is as expected).

Thanks!


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